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Lin FU, Wu XIONG, Francisco DINI-ANDREOTE, Beibei WANG, Chengyuan TAO, Yunze RUAN, Zongzhuan SHEN, Rong LI, Qirong SHEN
《农业科学与工程前沿(英文)》 2020年 第7卷 第3期 页码 307-316 doi: 10.15302/J-FASE-2020328
Harnessing disease-suppressive microbiomes constitutes a promising strategy for optimizing plant growth. However, relatively little information is available about the relationship between bulk and rhizosphere soil microbiomes. Here, the assembly of banana bulk soil and rhizosphere microbiomes was investigated in a monoculture system consisting of bio-organic (BIO) and organic management practices. Applying BIO practice in newly reclaimed fields resulted in a high-efficiency biocontrol rate, thus providing a promising strategy for pre-control of Fusarium wilt disease. The soil microbiota was further characterized by MiSeq sequencing and quantitative PCR. The results indicate that disease suppression was mediated by the structure of a suppressive rhizosphere microbiome with respect to distinct community composition, diversity and abundance. Overall microbiome suppressiveness was primarily related to a particular set of enriched bacterial taxa affiliated with s, , , , and . Finally, structural equation modeling was used to show that the changes in bulk soil bacterial community determined its induced rhizosphere bacterial community, which serves as an important and direct factor in restraining the pathogen. Collectively, this study provides an integrative approach to disentangle the biological basis of disease-suppressive microbiomes in the context of agricultural practice and soil management.
关键词: agricultural practice bulk soil disease suppression rhizosphere ecology
OPPORTUNITIES AND APPROACHES FOR MANIPULATING SOIL-PLANT MICROBIOMES FOR EFFECTIVE CROP NITROGEN USE
《农业科学与工程前沿(英文)》 2022年 第9卷 第3期 页码 333-343 doi: 10.15302/J-FASE-2022450
● Matching nitrification inhibitors with soil properties and nitrifiers is vital to achieve a higher NUE.
关键词: nitrogen microbiome NUE rhizosphere phyllosphere soil food web
Integrated analysis of gut microbiome and host immune responses in COVID-19
《医学前沿(英文)》 2022年 第16卷 第2期 页码 263-275 doi: 10.1007/s11684-022-0921-6
《医学前沿(英文)》 doi: 10.1007/s11684-023-1029-3
关键词: tumor prognosis molecular Microbiome subsets determine center analysis microbiome transcriptome data
Understanding building-occupant-microbiome interactions toward healthy built environments: A review
Shuai Li, Zhiyao Yang, Da Hu, Liu Cao, Qiang He
《环境科学与工程前沿(英文)》 2021年 第15卷 第4期 doi: 10.1007/s11783-020-1357-3
《环境科学与工程前沿(英文)》 2022年 第16卷 第5期 doi: 10.1007/s11783-022-1543-6
● Riverine microbiomes exhibited hyperlocal variation within a single transect.
关键词: Microbiome Freshwater Taxon accumulation curve Community assembly
Human microbiome and prostate cancer development: current insights into the prevention and treatment
Solmaz Ohadian Moghadam, Seyed Ali Momeni
《医学前沿(英文)》 2021年 第15卷 第1期 页码 11-32 doi: 10.1007/s11684-019-0731-7
关键词: microbiome prostate cancer prevention treatment molecular pathological epidemiology (MPE) biomarker
Rhizosphere immunity: targeting the underground for sustainable plant health management
Zhong WEI, Ville-Petri FRIMAN, Thomas POMMIER, Stefan GEISEN, Alexandre JOUSSET, Qirong SHEN
《农业科学与工程前沿(英文)》 2020年 第7卷 第3期 页码 317-328 doi: 10.15302/J-FASE-2020346
Managing plant health is a great challenge for modern food production and is further complicated by the lack of common ground between the many disciplines involved in disease control. Here we present the concept of rhizosphere immunity, in which plant health is considered as an ecosystem level property emerging from networks of interactions between plants, microbiota and the surrounding soil matrix. These interactions can potentially extend the innate plant immune system to a point where the rhizosphere immunity can fulfil all four core functions of a full immune system: pathogen prevention, recognition, response and homeostasis. We suggest that considering plant health from a meta-organism perspective will help in developing multidisciplinary pathogen management strategies that focus on steering the whole plant-microbe-soil networks instead of individual components. This might be achieved by bringing together the latest discoveries in phytopathology, microbiome research, soil science and agronomy to pave the way toward more sustainable and productive agriculture.
关键词: rhizosphere soil microbiome plant immunity microbial ecology plant health soilborne pathogens
《环境科学与工程前沿(英文)》 2022年 第16卷 第6期 doi: 10.1007/s11783-022-1560-5
Comparative analysis of impact of human occupancy on indoor microbiomes
《环境科学与工程前沿(英文)》 2021年 第15卷 第5期 doi: 10.1007/s11783-020-1383-1
• Exposure to indoor microbiomes is a public health concern in educational facilities.
关键词: Built environment Indoor microbiome Occupant Building Sequencing
Yuqiu Han, Xiangyang Jiang, Qi Ling, Li Wu, Pin Wu, Ruiqi Tang, Xiaowei Xu, Meifang Yang, Lijiang Zhang, Weiwei Zhu, Baohong Wang, Lanjuan Li
《医学前沿(英文)》 2019年 第13卷 第4期 页码 471-481 doi: 10.1007/s11684-019-0686-8
徐健, 马波, 苏晓泉, 黄适, 徐欣, 周学东, 黄巍, Rob Knight
《工程(英文)》 2017年 第3卷 第1期 页码 66-70 doi: 10.1016/J.ENG.2017.01.020
方法学创新一直是微生物组学研究的核心驱动力。我们认为在未来五到十年,微生物组的方法学体系在研究理念与技术平台方面将发生三大变革:①从监测菌群“结构”变化向监测菌群“功能/状态”变化的变革;②从细胞“群体”分析精度向细胞“个体”分析精度的转变;③从“数据分析”向“数据科学”的跨越。在这里我们针对实现上述三大方法学变革需要克服的关键科学或技术挑战,重点介绍了部分中国微生物组分析方法学研究团队及其国际合作伙伴的最新工作进展。我们相信中国微生物组计划应把握住当前这一重要机遇,通过在微生物组分析方法学前沿开展富有雄心、远见、创意与竞争力的交叉合作研究,为国际微生物组计划贡献一系列“中国制造”的新方法、新工具和新仪器。
Yang SONG, Chen ZHU, Waseem RAZA, Dongsheng WANG, Qiwei HUANG, Shiwei GUO, Ning LING, Qirong SHEN
《农业科学与工程前沿(英文)》 2019年 第6卷 第2期 页码 206-206 doi: 10.15302/J-FASE-2018234
Intestinal Epithelial Axin1 Deficiency Protects Against Colitis via Altered Gut Microbiota
Shari Garrett,Yongguo Zhang,Yinglin Xia,Jun Sun,
《工程(英文)》 doi: 10.1016/j.eng.2023.06.007
关键词: Axin1 Bacteria Microbiome inflammation Inflammatory bowel disease Immunity Microbiome Paneth cells Akkermansia muciniphila Wnt
Assessment of glass fiber-reinforced polyester pipe powder in soil improvement
《结构与土木工程前沿(英文)》 2021年 第15卷 第3期 页码 742-753 doi: 10.1007/s11709-021-0732-x
关键词: shallow foundation sandy soil bearing capacity soil improvement pipe powder
标题 作者 时间 类型 操作
Changes in bulk soil affect the disease-suppressive rhizosphere microbiome against Fusarium wilt disease
Lin FU, Wu XIONG, Francisco DINI-ANDREOTE, Beibei WANG, Chengyuan TAO, Yunze RUAN, Zongzhuan SHEN, Rong LI, Qirong SHEN
期刊论文
OPPORTUNITIES AND APPROACHES FOR MANIPULATING SOIL-PLANT MICROBIOMES FOR EFFECTIVE CROP NITROGEN USE
期刊论文
Microbiome subsets determine tumor prognosis and molecular characteristics of clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome data
期刊论文
Understanding building-occupant-microbiome interactions toward healthy built environments: A review
Shuai Li, Zhiyao Yang, Da Hu, Liu Cao, Qiang He
期刊论文
Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome
期刊论文
Human microbiome and prostate cancer development: current insights into the prevention and treatment
Solmaz Ohadian Moghadam, Seyed Ali Momeni
期刊论文
Rhizosphere immunity: targeting the underground for sustainable plant health management
Zhong WEI, Ville-Petri FRIMAN, Thomas POMMIER, Stefan GEISEN, Alexandre JOUSSET, Qirong SHEN
期刊论文
Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome
期刊论文
Antibiotics-mediated intestinal microbiome perturbation aggravates tacrolimus-induced glucose disorders
Yuqiu Han, Xiangyang Jiang, Qi Ling, Li Wu, Pin Wu, Ruiqi Tang, Xiaowei Xu, Meifang Yang, Lijiang Zhang, Weiwei Zhu, Baohong Wang, Lanjuan Li
期刊论文
Coupling of the chemical niche and microbiome in the rhizosphere: implications from watermelon grafting
Yang SONG, Chen ZHU, Waseem RAZA, Dongsheng WANG, Qiwei HUANG, Shiwei GUO, Ning LING, Qirong SHEN
期刊论文
Intestinal Epithelial Axin1 Deficiency Protects Against Colitis via Altered Gut Microbiota
Shari Garrett,Yongguo Zhang,Yinglin Xia,Jun Sun,
期刊论文